MIR.utils.other_utils

Miscellaneous utility helpers for MIR.

Functions

SLANT_label_reassign(label_map)	Reassign SLANT label IDs to contiguous indices.
create_zip(zip_filename, source_dir)	Create a deflate-compressed zip file from a directory.
load_partial_weights(model, checkpoint_path)	Load weights from a checkpoint into a model, skipping unmatched layers.
pkload(fname)	Load a pickled object from disk.
process_label()	Build the lookup from contiguous label index to FreeSurfer structure name.
savepkl(data, path)	Save an object to a pickle file.
write2csv(line, name)	Append a line to a CSV file.
zoom_img(img, pixel_dims[, order])	Resample a 3D image from its voxel spacing to a target spacing with scipy.ndimage.zoom.

Classes

CenterCropPad3D(*args, **kwargs)

Crop or pad a 3-D medical image tensor so the spatial size becomes exactly target_size = (X, Y, Z).