Index

_

__init__() (MIR.deformation_regularizer.KL_divergence method) (MIR.image_similarity.NCC method) (MIR.image_similarity.PCC method) (MIR.models.FourierNet method) (MIR.models.HyperVFA method) (MIR.models.LessNet method) (MIR.models.TransMorph method) (MIR.models.TransMorphLDDMM method) (MIR.models.TransVFA method) (MIR.models.VFA method)

C

convex_adam_features() (in module MIR.models.convexAdam) convex_adam_MIND() (in module MIR.models.convexAdam)

convex_adam_MIND_SPR() (in module MIR.models.convexAdam) convex_adam_MIND_SVF() (in module MIR.models.convexAdam)

F

FourierNet (class in MIR.models)

G

GLM() (in module MIR.statistical_analysis)

H

HyperVFA (class in MIR.models)

K

KL_divergence (class in MIR.deformation_regularizer)

L

LessNet (class in MIR.models)

M

MIR.accuracy_measures module MIR.accuracy_measures.acc_measures module MIR.accuracy_measures.digital_diffeomorphism module MIR.data_augmentation module MIR.deformation_regularizer module MIR.deformation_regularizer.GlobalRegularizers module MIR.deformation_regularizer.LocalRegularizers module MIR.image_similarity module MIR.image_similarity.CompositeRecon module MIR.image_similarity.Correlation_Ratio module MIR.image_similarity.Dice module MIR.image_similarity.MIND_SSC module MIR.image_similarity.Mutual_Information module MIR.image_similarity.NGF module MIR.image_similarity.Segmentation_Overlap module MIR.image_similarity.SSIM module MIR.intensity_normalization module MIR.intensity_normalization.base_cli module MIR.intensity_normalization.cli module MIR.intensity_normalization.errors module MIR.intensity_normalization.normalize module MIR.intensity_normalization.normalize.base module MIR.intensity_normalization.normalize.kde module MIR.intensity_normalization.normalize.nyul module MIR.intensity_normalization.normalize.whitestripe module MIR.intensity_normalization.normalize.zscore module MIR.intensity_normalization.plot module MIR.intensity_normalization.plot.histogram module MIR.intensity_normalization.typing module MIR.intensity_normalization.util module MIR.intensity_normalization.util.coregister module MIR.intensity_normalization.util.histogram_tools module MIR.intensity_normalization.util.io module MIR.intensity_normalization.util.preprocess module MIR.l2r_io module MIR.label_reference module MIR.models module MIR.models.affine_reg module MIR.models.atlas_builder module MIR.models.configs_FourierNet module MIR.models.configs_LessNet module MIR.models.configs_TransMorph module MIR.models.configs_VFA module MIR.models.configs_VoxelMorph module MIR.models.convexAdam module MIR.models.convexAdam.apply_convex module MIR.models.convexAdam.configs_ConvexAdam_MIND module MIR.models.convexAdam.convex_adam_nnUNet module MIR.models.convexAdam.convex_adam_utils module MIR.models.convexAdam.convex_adam_VFA module MIR.models.Deformable_Swin_Transformer module MIR.models.Deformable_Swin_Transformer_v2 module MIR.models.HyperMorph module MIR.models.HyperTransMorph module MIR.models.lddmm module MIR.models.MultiMorph module MIR.models.registration_utils module MIR.models.Segmentation_Heads module MIR.models.Selfsupervised_Learning_Heads module MIR.models.Swin_Transformer module

MIR.models.Synthesis_Heads module MIR.models.VoxelMorph module MIR.pretrained_wts module MIR.random_image_generation module MIR.random_image_generation.perlin_numpy module MIR.random_image_generation.perlin_numpy.perlin2d module MIR.random_image_generation.perlin_numpy.perlin3d module MIR.random_image_generation.perlin_numpy.perlin3d_torch module MIR.random_image_generation.random_shapes module MIR.statistical_analysis module MIR.utils module MIR.utils.deedsbcv_binary module MIR.utils.dicom_utils module MIR.utils.distributed module MIR.utils.other_utils module MIR.utils.precision module MIR.utils.registration_utils module MIR.utils.segmentation_utils module MIR.utils.training_utils module MIR.utils.visualization_utils module module MIR.accuracy_measures MIR.accuracy_measures.acc_measures MIR.accuracy_measures.digital_diffeomorphism MIR.data_augmentation MIR.deformation_regularizer MIR.deformation_regularizer.GlobalRegularizers MIR.deformation_regularizer.LocalRegularizers MIR.image_similarity MIR.image_similarity.CompositeRecon MIR.image_similarity.Correlation_Ratio MIR.image_similarity.Dice MIR.image_similarity.MIND_SSC MIR.image_similarity.Mutual_Information MIR.image_similarity.NGF MIR.image_similarity.Segmentation_Overlap MIR.image_similarity.SSIM MIR.intensity_normalization MIR.intensity_normalization.base_cli MIR.intensity_normalization.cli MIR.intensity_normalization.errors MIR.intensity_normalization.normalize MIR.intensity_normalization.normalize.base MIR.intensity_normalization.normalize.kde MIR.intensity_normalization.normalize.nyul MIR.intensity_normalization.normalize.whitestripe MIR.intensity_normalization.normalize.zscore MIR.intensity_normalization.plot MIR.intensity_normalization.plot.histogram MIR.intensity_normalization.typing MIR.intensity_normalization.util MIR.intensity_normalization.util.coregister MIR.intensity_normalization.util.histogram_tools MIR.intensity_normalization.util.io MIR.intensity_normalization.util.preprocess MIR.l2r_io MIR.label_reference MIR.models MIR.models.affine_reg MIR.models.atlas_builder MIR.models.configs_FourierNet MIR.models.configs_LessNet MIR.models.configs_TransMorph MIR.models.configs_VFA MIR.models.configs_VoxelMorph MIR.models.convexAdam MIR.models.convexAdam.apply_convex MIR.models.convexAdam.configs_ConvexAdam_MIND MIR.models.convexAdam.convex_adam_nnUNet MIR.models.convexAdam.convex_adam_utils MIR.models.convexAdam.convex_adam_VFA MIR.models.Deformable_Swin_Transformer MIR.models.Deformable_Swin_Transformer_v2 MIR.models.HyperMorph MIR.models.HyperTransMorph MIR.models.lddmm MIR.models.MultiMorph MIR.models.registration_utils MIR.models.Segmentation_Heads MIR.models.Selfsupervised_Learning_Heads MIR.models.Swin_Transformer MIR.models.Synthesis_Heads MIR.models.VoxelMorph MIR.pretrained_wts MIR.random_image_generation MIR.random_image_generation.perlin_numpy MIR.random_image_generation.perlin_numpy.perlin2d MIR.random_image_generation.perlin_numpy.perlin3d MIR.random_image_generation.perlin_numpy.perlin3d_torch MIR.random_image_generation.random_shapes MIR.statistical_analysis MIR.utils MIR.utils.deedsbcv_binary MIR.utils.dicom_utils MIR.utils.distributed MIR.utils.other_utils MIR.utils.precision MIR.utils.registration_utils MIR.utils.segmentation_utils MIR.utils.training_utils MIR.utils.visualization_utils

N

NCC (class in MIR.image_similarity)

P

PCC (class in MIR.image_similarity)

S

SITReg (in module MIR.models)

T

TransMorph (class in MIR.models)

TransMorphLDDMM (class in MIR.models) TransVFA (class in MIR.models)

V

VFA (class in MIR.models)